Diaminopimelate Epimerase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Diaminopimelate Epimerase
  Conformer 1
(PDB)
2q9h (A)
  Conformer 2
(PDB)
2q9j (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 160 0.21   78 - 80   93 - 94   107 - 261
2 107 0.3   4 - 77   81 - 92   95 - 106   262 - 271

Sequence


           ___________________________________________________________________________77_80__________92_____99_____________________ 
 2q9h(A) : MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHYRIFNADGSEVSQSGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNMGE 
         :                                                                                                                          
 2q9j(A) : MQFSKMHGLGNDFVVVDGVTQNVFFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHYRIFNADGSEVSQ-gNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKDDNQIRVNMGE 
           ___________________________________________________________________________77_80__________92_____99_____________________ 

           ________________________________________________________________________________________________________________________ 
 2q9h(A) : PIWEPAKIPFTANKFEKNYILRTDIQTVLCGAVSMGNPHCVVQVDDIQTANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQACGSGACAAVAVGIMQGLLNNNVQV 
         :                                                                                                                          
 2q9j(A) : PIWEPAKIPFTANKFEKNYILRTDIQTVLCGAVSMGNPHCVVQVDDIQTANVEQLGPLLESHERFPERVNAGFMQIINKEHIKLRVYERGAGETQASGSGACAAVAVGIMQGLLNNNVQV 
           ________________________________________________________________________________________________________________________ 

           __________________261_____________                                                                                       
 2q9h(A) : DLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL                                                                                       
         :                                                                                                                          
 2q9j(A) : DLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL                                                                                       
           __________________261_____________                                                                                       

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
2.4
Translation
(A)
0.3
Closure
(%)
75.5
Bending Residues
( green )
  77 - 78
  80 - 81
  92 - 95
  99 - 107
  261 - 262
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

Download and extract PyMOL PML script file Download