D-Maltodextrin Binding Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name D-Maltodextrin Binding Protein
  Conformer 1
(PDB)
1omp (A)
  Conformer 2
(PDB)
1dmb (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 203 0.35   98 - 104   115 - 258   310 - 329   331 - 362
2 156 0.22   4 - 97   105 - 114   259 - 309   330 - 330

Sequence


           _______________________________________________________________________________________________97______________114______ 
 1omp(A) : KIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKD 
         :                                                                                                                          
 1dmb(A) : KIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKD 
           _______________________________________________________________________________________________97______________114______ 

           ________________________________________________________________________________________________________________________ 
 1omp(A) : LLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKV 
         :                                                                                                                          
 1dmb(A) : LLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKV 
           ________________________________________________________________________________________________________________________ 

           _______________258________________________________________________309_________________329_______________________________ 
 1omp(A) : NYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEA 
         :                                                                                                                          
 1dmb(A) : NYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEA 
           _______________258________________________________________________309_________________329_______________________________ 

           __________                                                                                                               
 1omp(A) : LKDAQTRITK                                                                                                               
         :                                                                                                                          
 1dmb(A) : LKDAQTRITK                                                                                                               
           __________                                                                                                               

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
2.5
Translation
(A)
0.1
Closure
(%)
99.9
Bending Residues
( green )
  97 - 105
  114 - 115
  258 - 259
  309 - 310
  329 - 331
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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