E1 Envelope Glycoprotein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name E1 Envelope Glycoprotein
  Conformer 1
(PDB)
3n42 (F)
  Conformer 2
(PDB)
1rer (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 278 3.47   3 - 280
2 103 4.22   281 - 383

Sequence


           ________________________________________________________________________________________________________________________ 
 3n42(F) : GGYEHVTVIPNTVGVPYKTLVNRPGYSPMVLEMELLSVTLEPTLSLDYITCEYKTVIPSPYVKCCGTAECKDKNLPDYSCKVFTGVYPFMWGGAYCFCDAENTQLSEAHVEKSESCKTEF 
         :                                                                                                                          
 1rer(A) : **YEHSTVMPNVVGFPYKAHIERPGYSPLTLQMQVVETSLEPTLNLEYITCEYKTVVPSPYVKCCGASECSTKEKPDYQCKVYTGVYPFMWGGAYCFCDSENTQLSEAYVDRSDVCRHDH 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3n42(F) : ASAYRAHTASASAKLRVLYQGNNITVTAYANGDHAVTVKDAKFIVGPMSSAWTPFDNKIVVYKGDVYNMDYPPFGAGRPGQFGDIQSRTPESKDVYANTQLVLQRPAAGTVHVPYSQAPS 
         :                                                                                                                          
 1rer(A) : ASAYKAHTASLKAKVRVMYGNVNQTVDVYVNGDHAVTIGGTQFIFGPLSSAWTPFDNKIVVYKDEVFNQDFPPYGSGQPGRFGDIQSRTVESNDLYANTALKLARPSPGMVHVPYTQTPS 
           ________________________________________________________________________________________________________________________ 

           _______________________________________280______________________________________________________________________________ 
 3n42(F) : GFKYWLKERGASLQHTAPFGCQIATNPVRAVNCAVGNMPISIDIPEAAFTRVVDAPSLTDMSCEVPACTHSSDFGGVAIIKYAASKKGKCAVHSMTNAVTIREAEIEVEGNSQLQISFST 
         :                                                                                                                          
 1rer(A) : GFKYWLKEKGTALNTKAPFGCQIKTNPVRAMNCAVGNIPVSMNLPDSAFTRIVEAPTIIDLTCTVATCTHSSDFGGVLTLTYKTNKNGDCSVHSHSNVATLQEATAKVKTAGKVTLHFST 
           _______________________________________280______________________________________________________________________________ 

           ___________________________________                                                                                      
 3n42(F) : ALASAEFRVQVCSTQVHCAAECHPPKDHIVNYPAS                                                                                      
         :                                                                                                                          
 1rer(A) : ASASPSFVVSLCSARATCSASCEPPKDHIVPYA**                                                                                      
           ___________________________________                                                                                      

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
48.3
Translation
(A)
14.7
Closure
(%)
98.6
Bending Residues
( green )
  280 - 293
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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