Eiav Capsid Protein P26

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Eiav Capsid Protein P26
  Conformer 1
(PDB)
2eia (A)
  Conformer 2
(PDB)
1eia  
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 129 0.82   19 - 147
2 73 0.54   148 - 220

Sequence


           ________________________________________________________________________________________________________________________ 
 2eia(A) : *PRGYTTWVNTIQTNGLLNEASQNLFGILSVDCTSEEMNAFLDVVPGQAGQKQILLDAIDKIADDWDNRHPLPNAPLVAPPQGPIPMTARFIRGLGVPRERQMEPAFDQFRQTYRQWIIE 
         :                                                                                                                          
 1eia    : TPRGYTTWVNTIQTNGLLNEASQNLFGILSVDCTSEEMNAFLDVVPGQAGQKQILLDAIDKIADDWDNRHPLPNAPLVAPPQGPIPMTARFIRGLGVPRERQMEPAFDQFRQTYRQWIIE 
           ________________________________________________________________________________________________________________________ 

           ________146____________________________________________________________________________                                  
 2eia(A) : AMSEGIKVMIGKPKAQNIRQGAKEPYPEFVDRLLSQIKSEGHPQEISKFLTDTLTIQNANEECRNAMRHLRPEDTLEEKMYACRDIG                                  
         :                                                                                                                          
 1eia    : AMSEGIKVMIGKPKAQNIRQGAKEPYPEFVDRLLSQIKSEGHPQEISKFLTDTLTIQNANEECRNAMRHLRPEDTLEEKMYACRDIG                                  
           ________146____________________________________________________________________________                                  

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
55.6
Translation
(A)
0.2
Closure
(%)
11.9
Bending Residues
( green )
  146 - 150
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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