Elongation Factor 1-Alpha

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Elongation Factor 1-Alpha
  Conformer 1
(PDB)
4c0s (A)
  Conformer 2
(PDB)
3wxm (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 217 5.82   90 - 96   105 - 108   241 - 447
2 208 4.31   7 - 89   97 - 104   109 - 240

Sequence


           ____________________________________________________________________________________89___94_______104___________________ 
 4c0s(A) : EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA-AEMkGSFKYAWVLDKLKAERERGITIDISLWKFETTKYYITIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEF 
         :                                                                                                                          
 3wxm(A) : *KPHMNLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEF 
           ____________________________________________________________________________________88___93_______103___________________ 

           ________________________________________________________________________________________________________________238_____ 
 4c0s(A) : EAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPAYe-KRYDEIVKEVSAYIKKIGYNPATVPFVPISGWHGDNMLEPSPNMPWFKGWKVERKEGNASGVSLLEALDTILPP-rPTD 
         :                                                                                                                          
 3wxm(A) : EAGMSTEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLGYQVDKIPFIPVSAWKGDNLIERSPNMPWY------------NGPTLVEALDQLQPPAKPVD 
           ________________________________________________________________________________________________________________225_____ 

           ________________________________________________________________________________________________________________________ 
 4c0s(A) : KPLRLPLQDVYKIGGIGTVPVGRVETGILRPGMVVTFAPVNITTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDIRRGNVCGDSKSDPPQEAAQFTSQVIILNHPGQISAGYSPVIDC 
         :                                                                                                                          
 3wxm(A) : KPLRIPVQNVYSIPGAGTVPVGRVETGVLRVGDKVVFMPPGVVGEVRSIEMHYQQLQQAEPGDNIGFAVRGVSKSDIKRGDVAGHLDK-PPTVAEEFEARIFVIWHPSAITVGYTPVIHV 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________________________________________________________                             
 4c0s(A) : HTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVIKNVEKKSGGAGKVTKSA                             
         :                                                                                                                          
 3wxm(A) : HTASVSSRIIEIKAKLDPKTGQVVEQNPQFLKAGDAAIVRFKPVKPLVVEKFSEIPQLGRFAMRDMNRTVGIGIVTDVKPAKVDIK******                             
           ____________________________________________________________________________________________                             

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
86.8
Translation
(A)
2.0
Closure
(%)
88.0
Bending Residues
( green )
  89 - 92
  94 - 99
  104 - 109
  238 - 242
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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