Elongation Factor Tu

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Elongation Factor Tu
  Conformer 1
(PDB)
1eft (A)
  Conformer 2
(PDB)
1ob5 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 255 1.44   8 - 215   218 - 222   226 - 226   228 - 228   230 - 230   235 - 242   247 - 248   258 - 261   266 - 268   275 - 281   283 - 285   292 - 299   301 - 301   307 - 309
2 141 1.29   216 - 217   223 - 225   227 - 227   229 - 229   231 - 234   243 - 246   249 - 257   262 - 265   269 - 274   282 - 282   286 - 291   300 - 300   302 - 306   310 - 403

Sequence


           ________________________________________________________________________________________________________________________ 
 1eft(A) : AKGEFIRTKPHVNVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI 
         :                                                                                                                          
 1ob5(A) : *****IRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________________________________________________214_____222_________________2 
 1eft(A) : LLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNPKTKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATG 
         :                                                                                                                          
 1ob5(A) : LLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNPKTKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATG 
           ___________________________________________________________________________________________214_____222_________________2 

           42_246________257_____265______274____281_______291_____299___305_______________________________________________________ 
 1eft(A) : RIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVERGQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVRLPQGVE 
         :                                                                                                                          
 1ob5(A) : RIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVERGQVLAKPGSITPHTKFEASVYILKKEEGGRHTGFFTGYRPQFYFRTTDVTGVVRLPQGVE 
           42_246________257_____265______274____281_______291_____299___305_______________________________________________________ 

           _____________________________________________                                                                            
 1eft(A) : MVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE                                                                            
         :                                                                                                                          
 1ob5(A) : MVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE                                                                            
           _____________________________________________                                                                            

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
11.7
Translation
(A)
0.4
Closure
(%)
34.9
Bending Residues
( green )
  214 - 218
  222 - 223
  225 - 235
  242 - 243
  246 - 249
  257 - 262
  265 - 266
  268 - 269
  274 - 275
  281 - 286
  291 - 292
  299 - 302
  305 - 313
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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