Elongation Factor Tu-A

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Elongation Factor Tu-A
  Conformer 1
(PDB)
4h9g (A)
  Conformer 2
(PDB)
2c78 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 98 0.67   216 - 313
2 203 0.58   11 - 213
3 90 0.57   314 - 403

Sequence


           ________________________________________________________________________________________________________________________ 
 4h9g(A) : KGEFVRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHIL 
         :                                                                                                                          
 2c78(A) : *******KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHIL 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________________________________210_______________________________ 
 4h9g(A) : LARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGR 
         :                                                                                                                          
 2c78(A) : LARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGR 
           ______________________________________________________________________________________210_______________________________ 

           _____________________________________________________________________313________________________________________________ 
 4h9g(A) : IERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEM 
         :                                                                                                                          
 2c78(A) : IERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEM 
           _____________________________________________________________________313________________________________________________ 

           ____________________________________________                                                                             
 4h9g(A) : VMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE                                                                             
         :                                                                                                                          
 2c78(A) : VMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE                                                                             
           ____________________________________________                                                                             

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
27.1
Translation
(A)
4.0
Closure
(%)
100.0
Bending Residues
( green )
  210 - 218
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
16.5
Translation
(A)
-0.8
Closure
(%)
79.6
Bending Residues
( green )
  313 - 314
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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