Endo-1,4-Beta-Xylanase A

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Endo-1,4-Beta-Xylanase A
  Conformer 1
(PDB)
2dcy (E)
  Conformer 2
(PDB)
2qz3 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 127 0.66   4 - 45   47 - 69   81 - 97   106 - 107   130 - 144   151 - 159   165 - 183
2 53 0.6   46 - 46   70 - 80   98 - 105   108 - 129   145 - 150   160 - 164

Sequence


           ___________________________________________45______________________69_________80_______________97_____105_______________ 
 2dcy(E) : ASTDYWQNWTDGGGIVNAVNGSGGNYSVNWSNTGNFVVGKGWTTGSPFRTINYNAGVWAPNGNGYLTLYGWTRSPLIEYYVVDSWGTYRPTGTYKGTVKSDGGTYDIYTTTRYNAPSIDG 
         :                                                                                                                          
 2qz3(B) : *STDYWQNWTDGGGIVNAVNGSGGNYSVNWSNTGNFVVGKGWTTGSPFRTINYNAGVWAPNGNGYLTLYGWTRSPLIEYYVVDSWGTYRPTGTYKGTVKSDGGTYDIYTTTRYNAPSIDG 
           ___________________________________________45______________________69_________80_______________97_____105_______________ 

           ______129____________144___150______159__164_____________________                                                        
 2dcy(E) : DRTTFTQYWSVRQSKRPTGSNATITFSNHVNAWKSHGMNLGSNWAYQVMATEGYQSSGSSNVTVW                                                        
         :                                                                                                                          
 2qz3(B) : DRTTFTQYWSVRQSKRPTGSNATITFSNHVNAWKSHGMNLGSNWAYQVMATAGYQSSGSSNVTVW                                                        
           ______129____________144___150______159__164_____________________                                                        

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
7.7
Translation
(A)
0.1
Closure
(%)
93.0
Bending Residues
( green )
  45 - 47
  69 - 70
  80 - 81
  97 - 98
  105 - 108
  129 - 130
  144 - 145
  150 - 151
  159 - 160
  164 - 165
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

Download and extract PyMOL PML script file Download