Fab 9B1, Heavy Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Fab 9B1, Heavy Chain
  Conformer 1
(PDB)
1q0x (H)
  Conformer 2
(PDB)
1q0y (H)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 120 0.2   3 - 116
2 90 0.15   117 - 223

Sequence


           _______________________________________________________________________________________________________________________1 
 1q0x(H) : EVQLQQSGAELMKPGASVKISCKATGYTFSSYWIEWVKQRPGHGLEWIGEILPGSGDTIFNEKFKGKATFTADTSSNTAYMQLSSLTSEDSAVYYCARWVLDYYGMDYWGQGTSLTVSSA 
         :                                                                                                                          
 1q0y(H) : EVQLQQSGAELMKPGASVKISCKATGYTFSSYWIEWVKQRPGHGLEWIGEILPGSGDTIFNEKFKGKATFTADTSSNTAYMQLSSLTSEDSAVYYCARWVLDYYGMDYWGQGTSLTVSSA 
           _______________________________________________________________________________________________________________________1 

           16_____________________________________________________________________________________________                          
 1q0x(H) : STTPPSVYPLAPGGsAMVTLGCLVKGYFPEPVTVVWNKGSLSTGTHTFPAVLAADLYTLSSSVTVSASSWPGQSVTCNVAHPASSTKVDKKIAPS                          
         :                                                                                                                          
 1q0y(H) : STTPPSVYPLAPGGsAMVTLGCLVKGYFPEPVTVVWNKGSLSTGTHTFPAVLAADLYTLSSSVTVSASSWPGQSVTCNVAHPASSTKVDKKIAPS                          
           16_____________________________________________________________________________________________                          

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
1.4
Translation
(A)
0.3
Closure
(%)
95.6
Bending Residues
( green )
  116 - 117
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

Download and extract PyMOL PML script file Download