Flavocytochrome C3

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Flavocytochrome C3
  Conformer 1
(PDB)
1qjd (A)
  Conformer 2
(PDB)
1qo8 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 411 1.96   3 - 52   55 - 361   501 - 564
2 141 0.95   53 - 54   362 - 500

Sequence


           _____________________________________________47_________________________________________________________________________ 
 1qjd(A) : ADNLAEFHVQNQECDSCHTPDGELSNDSLTYENTQCVSCHGTLAEVAETTKHEHYNAHASHFPGEVACTSCHSAHEKSMVYCDSCHSFDFN-MPY--AKK---WLRDEPTIAELAKDKSE 
         :                                                                                                                          
 1qo8(A) : TPDMGSFHADMGSCQSCHAKPIKVT-DSETHENAQCKSCHGEYAELAND--KLQFDPHNSHL-GDINCTSCHKGHEEPKFYCNECHSFDIKPMPFSDAKKK--KSWDD------GWDQDK 
           _____________________________________________47_________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1qjd(A) : RQAALASAPHDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMTAMGADLTDVG 
         :                                                                                                                          
 1qo8(A) : IQKAIAAGPSETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDIKLVTILAEQSADGVQWLESLGANLDDLK 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1qjd(A) : MMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGG 
         :                                                                                                                          
 1qo8(A) : RSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGMNKEMIAYYRPTMKDMTSSNNITATGDGVLMAKEIGA 
           ________________________________________________________________________________________________________________________ 

           ____361_________________________________________________________________________________________________________________ 
 1qjd(A) : ALKDMQYIQAHPTLSVKGGVMVTEAVRGNGAILVNREGKRFVNEITTRDKASAAILAQTGKSAYLIFDDSVRKSLSKIDKYIGLGVAPTADSLVKLGKMEGIDGKALTETVARYNSLVSS 
         :                                                                                                                          
 1qo8(A) : SMTDIDWVQAHPTVGKDSRILISETVRGVGAVMVNKDGNRFISELTTRDKASDAILKQPGQFAWIIFDNQLYKKAKMVRGYDHLEMLYKGDTVEQLAKSTGMKVADLAKTVSDYNGYVAS 
           ____356_________________________________________________________________________________________________________________ 

           ______________________499_______________________________________________________________________                         
 1qjd(A) : GKDTDFERPNLPRALNEGNYYAIEVTPGVHHTMGGVMIDTKAEVMNAKKQVIPGLYGAGEVTGGVHGANRLGGNAISDIITFGRLAGEEAAKYS**                         
         :                                                                                                                          
 1qo8(A) : GKDTAFGRADMPLNMTQSPYYAVKVAPGIHHTMGGVAINTTASVLDLQSKPIDGLFAAGEVTGGVHGYNRLGGNAIADTVVFGRIAGDNAAKHALD                         
           ______________________494_______________________________________________________________________                         

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
44.1
Translation
(A)
0.7
Closure
(%)
99.9
Bending Residues
( green )
  47 - 55
  361 - 363
  499 - 501
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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