10-Formyltetrahydrofolate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 10-Formyltetrahydrofolate Dehydrogenase
  Conformer 1
(PDB)
1s3i (A)
  Conformer 2
(PDB)
2cfi (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 178 0.69   105 - 132   137 - 171   191 - 305
2 125 0.82   3 - 104   133 - 136   172 - 190

Sequence


           ________________________________________________________________________________________________________104_____________ 
 1s3i(A) : ***MKIAVIGQSLFGQEVYCQLRKEGHEVVGVFTIPDKDGKADPDGLEAEKDGVPVFKFPRWRARGQALPEVVAKYQALGAELNVLPFCSQFIPMEVINAPRHGSIIYHPSLLPRHRGAS 
         :                                                                                                                          
 2cfi(A) : FQSMKIAVIGQSLFGQEVYCHLRKEGHEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRWRAKGQALPDVVAKYQALGAELNVLPFCSQFIPMEIISAPRHGSIIYHPSLLPRHRGAS 
           ________________________________________________________________________________________________________104_____________ 

           ____________132_136________________________________171________________190_______________________________________________ 
 1s3i(A) : AINWTLIHGDKKGGFTIFWADDGLDTGDLLLQKECEVLPDDTVSTLYNRFLFPEGIKGMVQAVRLIAEGTAPRCPQSEEGATYEGIQKKETAKINWDQPAEAIHNWIRGNDKVPGAWTEA 
         :                                                                                                                          
 2cfi(A) : AINWTLIHGDKKGGFSIFWADDGLDTGDLLLQKECEVLPDDTVSTLYNRFLFPEGIKGMVQAVRLIAEGKAPRLPQPEEGATYEGIQKKETAKINWDQPAEAIHNWIRGNDKVPGAWTEA 
           ____________132_136________________________________171________________190_______________________________________________ 

           ______________________________________________________________________                                                   
 1s3i(A) : CGQKLTFFNSTLNTSGLSTQGEALPIPGAHRPGVVTKAGLILFGNDDRMLLVKNIQLEDGKMMPASQFFK                                                   
         :                                                                                                                          
 2cfi(A) : CEQKLTFFNSTLNTSGLVPEGDALPIPGAHRPGVVTKAGLILFGNDDKMLLVKNIQLEDGKMILASNFFK                                                   
           ______________________________________________________________________                                                   

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
10.8
Translation
(A)
0.0
Closure
(%)
99.5
Bending Residues
( green )
  104 - 105
  132 - 133
  136 - 137
  171 - 172
  190 - 196
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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