Glutamate Receptor, Ionotropic Kainate 3

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Receptor, Ionotropic Kainate 3
  Conformer 1
(PDB) 		3u94 (A)
  Conformer 2
(PDB) 		1fto (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 142 1.58   7 - 108   214 - 253
2 105 1.28   109 - 213

Sequence


           ________________________________________________________________________________________________________108_____________ 
 3u94(A) : NRSLIVTTLLEEPFVMFRKSDRTLYGNDRFEGYCIDLLKELAHILGFSYEIRLVEDGKYGAQD-DKGQWNGMVKELIDHKADLAVAPLTITHVREKAIDFSKPFMTLGVSILYRKGTPID 
         :                                                                                                                          
 1fto(A) : **TVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIE 
           ________________________________________________________________________________________________________109_____________ 

           ____________________________________________________________________________________________212_________________________ 
 3u94(A) : SADDLAKQTKIEYGAVKDGATMTFFKKSKISTFEKMWAFM-SSKPSALVKNNEEGIQRTLTAD--YALLMESTTIEYITQRN-CNLTQIGGLIDSKGYGIGTPMGSPYRDKITIAILQLQ 
         :                                                                                                                          
 1fto(A) : SAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLN 
           ____________________________________________________________________________________________217_________________________ 

           ____________________                                                                                                     
 3u94(A) : EEDKLHIMKEKWWRGSG-CP                                                                                                     
         :                                                                                                                          
 1fto(A) : EQGLLDKLKNKWWYDKGEC*                                                                                                     
           ____________________                                                                                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		25.9
Translation
(A) 		0.2
Closure
(%) 		94.3
Bending Residues
( green ) 		  108 - 109
  212 - 214
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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