Glutamate Receptor Ionotropic, Nmda 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Receptor Ionotropic, Nmda 1
  Conformer 1
(PDB)
4kcc (A)
  Conformer 2
(PDB)
1pb8 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 173 0.79   6 - 144   241 - 287
2 96 0.49   145 - 240

Sequence


           ________________________________________________________________________________________________________________________ 
 4kcc(A) : STRLKIVTIHQEPFVYVKPTMSDGTCKEEFTVNGDPVKKVICTGPN-hTVPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERV-----kEWNGMMGELLSGQADMIVAPLTINN 
         :                                                                                                                          
 1pb8(A) : *TRLKIVTIHQEPFVYVKPTMSDGTCKEEFTVNGDPVKKVICTGPNrHTVPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAPLTINT 
           ________________________________________________________________________________________________________________________ 

           ____________144_____________________________________________________________________________________________240_________ 
 4kcc(A) : ERAQYIEFSKPFKYQGLTILVKKGTRITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSG 
         :                                                                                                                          
 1pb8(A) : ERAQYIEFSKPFKYQGLTILVKKGTRITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSG 
           ____________144_____________________________________________________________________________________________240_________ 

           ___________________________________________                                                                              
 4kcc(A) : FGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRYQEC**                                                                              
         :                                                                                                                          
 1pb8(A) : FGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRYQECDS                                                                              
           ___________________________________________                                                                              

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
24.1
Translation
(A)
-0.4
Closure
(%)
99.7
Bending Residues
( green )
  144 - 146
  240 - 248
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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