Glutamate Receptor Ionotropic, Nmda 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Receptor Ionotropic, Nmda 1
  Conformer 1
(PDB) 		4kcc (A)
  Conformer 2
(PDB) 		1y1m (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 159 0.45   7 - 144   248 - 283
2 103 0.4   145 - 247

Sequence


           ________________________________________________________________________________________________________________________ 
 4kcc(A) : STRLKIVTIHQEPFVYVKPTMSDGTCKEEFTVNGDPVKKVICTGPNhTVPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERV-----kEWNGMMGELLSGQADMIVAPLTINNE 
         :                                                                                                                          
 1y1m(A) : **RLKIVTIHQEPFVYVKPTMSDGTCKEEFTVNGDPVKKVICTGP--tVPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAPLTINNE 
           ________________________________________________________________________________________________________________________ 

           ___________144____________________________________________________________________________________________________247___ 
 4kcc(A) : RAQYIEFSKPFKYQGLTILVKKGTRITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGF 
         :                                                                                                                          
 1y1m(A) : RAQYIEFSKPFKYQGLTILVKKGTRITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGF 
           ___________144____________________________________________________________________________________________________247___ 

           ________________________________________                                                                                 
 4kcc(A) : GIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRYQEC                                                                                 
         :                                                                                                                          
 1y1m(A) : GIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWV*****                                                                                 
           ________________________________________                                                                                 

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		8.1
Translation
(A) 		0.0
Closure
(%) 		85.6
Bending Residues
( green ) 		  144 - 145
  247 - 248
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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