Glutamate Receptor Ionotropic, Nmda 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Receptor Ionotropic, Nmda 1
  Conformer 1
(PDB)
4kcc (A)
  Conformer 2
(PDB)
2a5t (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 166 0.74   6 - 145   246 - 285
2 100 0.57   146 - 245

Sequence


           ________________________________________________________________________________________________________________________ 
 4kcc(A) : STRLKIVTIHQEPFVYVKPTMSDGTCKEEFTVNGDPVKKVICTGPNhTVPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVk-EWNGMMGELLSGQADMIVAPLTINNERAQY 
         :                                                                                                                          
 2a5t(A) : *TRLKIVTIHQEPFVYVKPTMSDGTCKEEFTVNGDPVKKVICTGPN-tVPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVkKEWNGMMGELLSGQADMIVAPLTINNERAQY 
           ________________________________________________________________________________________________________________________ 

           ________145_____________________________________________________________________________________________241_____________ 
 4kcc(A) : IEFSKPFKYQGLTILVKKGTRITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGM 
         :                                                                                                                          
 2a5t(A) : IEFSKPFKYQGLTILVKKGTRITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGM 
           ________145_____________________________________________________________________________________________241_____________ 

           ____________________________________                                                                                     
 4kcc(A) : RKDSPWKQNVSLSILKSHENGFMEDLDKTWVRYQEC                                                                                     
         :                                                                                                                          
 2a5t(A) : RKDSPWKQNVSLSILKSHENGFMEDLDKTWVRY***                                                                                     
           ____________________________________                                                                                     

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
24.4
Translation
(A)
-0.8
Closure
(%)
99.9
Bending Residues
( green )
  145 - 146
  241 - 246
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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