Glutamate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Dehydrogenase
  Conformer 1
(PDB)
1hrd (A)
  Conformer 2
(PDB)
1hrd (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 270 0.22   3 - 29   33 - 208   215 - 217   219 - 221   227 - 227   340 - 343   363 - 368   375 - 406   423 - 423   425 - 425   428 - 428   432 - 435   437 - 447
2 175 0.29   30 - 32   209 - 214   218 - 218   222 - 226   228 - 339   344 - 362   369 - 374   407 - 422   424 - 424   426 - 427   429 - 431   436 - 436

Sequence


           ___________________________29_32________________________________________________________________________________________ 
 1hrd(A) : SKYVDRVIAEVEKKYADEPEFVQTVEEVLSSLGPVVDAHPEYEEVALLERMVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYKGGLRFAPSVNLSIMKFLGFEQAFKDSLTTLP 
         :                                                                                                                          
 1hrd(C) : SKYVDRVIAEVEKKYADEPEFVQTVEEVLSSLGPVVDAHPEYEEVALLERMVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYKGGLRFAPSVNLSIMKFLGFEQAFKDSLTTLP 
           ___________________________29_32________________________________________________________________________________________ 

           _____________________________________________________________________________________208___214____221__226______________ 
 1hrd(A) : MGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDLGVGAREIGYMYGQYRKIVGGFYNGVLTGKARSFGGSLVRPEATGYGSVYYVEAVMKHENDTLVGKTVALAGFGN 
         :                                                                                                                          
 1hrd(C) : MGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDLGVGAREIGYMYGQYRKIVGGFYNGVLTGKARSFGGSLVRPEATGYGSVYYVEAVMKHENDTLVGKTVALAGFGN 
           _____________________________________________________________________________________208___214____221__226______________ 

           ________________________________________________________________________________________________339_343________________3 
 1hrd(A) : VAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFFPGEKPWGQKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEALRFLMQ 
         :                                                                                                                          
 1hrd(C) : VAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFFPGEKPWGQKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEALRFLMQ 
           ________________________________________________________________________________________________339_343________________3 

           62___368___374____________________________405______________422______431_435______________                                
 1hrd(A) : QPNMVVAPSKAVNAGGVLVSGFEMSQNSERLSWTAEEVDSKLHQVMTDIHDGSAAAAERYGLGYNLVAGANIVGFQKIADAMMAQGIAW                                
         :                                                                                                                          
 1hrd(C) : QPNMVVAPSKAVNAGGVLVSGFEMSQNSERLSWTAEEVDSKLHQVMTDIHDGSAAAAERYGLGYNLVAGANIVGFQKIADAMMAQGIAW                                
           62___368___374____________________________405______________422______431_435______________                                

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
2.2
Translation
(A)
0.0
Closure
(%)
96.1
Bending Residues
( green )
  29 - 30
  32 - 33
  208 - 209
  214 - 219
  221 - 222
  226 - 228
  339 - 340
  343 - 344
  362 - 366
  368 - 369
  374 - 375
  405 - 407
  422 - 429
  431 - 432
  435 - 437
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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