Glutamate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Dehydrogenase
  Conformer 1
(PDB)
1euz (A)
  Conformer 2
(PDB)
1euz (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 216 0.43   6 - 185   349 - 368   402 - 417
2 196 0.44   186 - 348   369 - 401

Sequence


           ________________________________________________________________________________________________________________________ 
 1euz(A) : IDPFEMAVKQLERAAQYMDISEEALEWLKKPMRIVEVSVPIEMDDGSVKVFTGFRVQHNWARGPTKGGIRWHPAETLSTVKALATWMTWKVAVVDLPYGGGKGGIIVNPKELSEREQERL 
         :                                                                                                                          
 1euz(B) : IDPFEMAVKQLERAAQYMDISEEALEWLKKPMRIVEVSVPIEMDDGSVKVFTGFRVQHNWARGPTKGGIRWHPAETLSTVKALATWMTWKVAVVDLPYGGGKGGIIVNPKELSEREQERL 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________________185__________________________________________________________ 
 1euz(A) : ARAYIRAVYDVIGPWTDIPAPDVYTNPKIMGWMMDEYETIMRRKGPAFGVITGKPLSIGGSLGRGTATAQGAIFTIREAAKALGIDLKGKKIAVQGYGNAGYYTAKLAKEQLGMTVVAVS 
         :                                                                                                                          
 1euz(B) : ARAYIRAVYDVIGPWTDIPAPDVYTNPKIMGWMMDEYETIMRRKGPAFGVITGKPLSIGGSLGRGTATAQGAIFTIREAAKALGIDLKGKKIAVQGYGNAGYYTAKLAKEQLGMTVVAVS 
           ___________________________________________________________185__________________________________________________________ 

           ____________________________________________________________________________________________________346_________________ 
 1euz(A) : DSRGGIYNPDGLDPDEVLKWKREHGSVKDFPGATNITNEELLELEVDVLAPAAIEEVITEKNADNIKAKIVAEVANGPVTPEADDILREKGILQIPDFLCNAGGVTVSYFEWVQNINGYY 
         :                                                                                                                          
 1euz(B) : DSRGGIYNPDGLDPDEVLKWKREHGSVKDFPGATNITNEELLELEVDVLAPAAIEEVITEKNADNIKAKIVAEVANGPVTPEADDILREKGILQIPDFLCNAGGVTVSYFEWVQNINGYY 
           ____________________________________________________________________________________________________346_________________ 

           __368______________________________401__________________                                                                 
 1euz(A) : WTEEEVREKLDKKMTKAFWEVYNTHKDKNIHMRDAAYVVAVSRVYQAMKDRGWVKK                                                                 
         :                                                                                                                          
 1euz(B) : WTEEEVREKLDKKMTKAFWEVYNTHKDKNIHMRDAAYVVAVSRVYQAMKDRGWVKK                                                                 
           __368______________________________401__________________                                                                 

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
11.4
Translation
(A)
-0.3
Closure
(%)
88.7
Bending Residues
( green )
  185 - 188
  346 - 349
  368 - 369
  401 - 402
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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