Saccharopine Reductase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Saccharopine Reductase
  Conformer 1
(PDB) 		1e5l (A)
  Conformer 2
(PDB) 		1ff9 (A)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 224 0.43   7 - 134   157 - 168   210 - 220   246 - 249   348 - 356   383 - 444
2 87 0.65   135 - 156   182 - 194   221 - 245   357 - 382   445 - 445
3 103 0.77   172 - 181   255 - 347

Sequence


           ________________________________________________________________________________________________________________________ 
 1e5l(A) : ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFHATVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGITVMN 
         :                                                                                                                          
 1ff9(A) : ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIP--fHATVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGITVMN 
           ________________________________________________________________________________________________________________________ 

           _________133____________________156_________168_172_______182________________________________217________________________ 
 1e5l(A) : EIGLDPGIDHLYAIKTIEEVHAAGGKIKTFLSYCGGLPAPESSDNPLGYKFSWSSRGVLLALRNAASFYKDGKVTNVAGPELMATAKPYFIYPGFAFVAYPNRDSTPYKERYQIPEADNI 
         :                                                                                                                          
 1ff9(A) : EIGLDPGIDHLYAIKTIEEVHAAGGKIKTFLSYCGGLPAPESSDNPLGYKFSWSSRGVLLALRNAASFYKDGKVTNVAGPELMATAKPYFIYPGFAFVAYPNRDSTPYKERYQIPEADNI 
           _________133____________________156_________168_172_______182________________________________217________________________ 

           _245_249_______________________________________________________________________________________________347______356_____ 
 1e5l(A) : VRGTLRYQGFPQFIKVLVDIGFLSDEEQPFLKEAIPWKEATQKIVKASSASEQDIVSTIVSNATFESTEEQKRIVAGLKWLGIFSDKKITPRGNALDTLCATLEEKMQFEEGERDLVMLQ 
         :                                                                                                                          
 1ff9(A) : VRGTLRYQGFPQFIKVLVDIGFLSDEEQPFLKEAIPWKEATQKIVKASSASEQDIVSTIVSNATFESTEEQKRIVAGLKWLGIFSDKKITPRGNALDTLCATLEEKMQFEEGERDLVMLQ 
           _245_249_______________________________________________________________________________________________347______356_____ 

           __________________382___________________________________________________________444______                                
 1e5l(A) : HKFEIENKDGSRETRTSSLCEYGAPIGSGGYSAMAKLVGVPCAVAVKFVLDGTISDRGVLAPMNSKINDPLMKELKEKYGIECKEKVVA                                
         :                                                                                                                          
 1ff9(A) : HKFEIENKDGSRETRTSSLCEYGAPIGSGGYSAMAKLVGVPCAVAVKFVLDGTISDRGVLAPMNSKINDPLMKELKEKYGIECKEKVVA                                
           __________________382___________________________________________________________444______                                

Morph
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Domain Pairs

Fixed Domain Moving Domain Rotation Angle Translation   (A) Closure Bending Residues  
1 2 6.3 0.0 81.4   133 - 135   156 - 157   182 - 210   217 - 221   245 - 246   356 - 357   382 - 383   444 - 445 Bending Region Analysis
1 3 7.0 0.1 1.2   168 - 181   249 - 255   347 - 349 Bending Region Analysis
2 3 7.2 -0.7 92.5   172 - 194 Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 2 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 2

Movement classification:

No Contacts

PyMOL Script

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