Small-Conductance Mechanosensitive Channel

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Small-Conductance Mechanosensitive Channel
  Conformer 1
(PDB) 		2oau (D)
  Conformer 2
(PDB) 		2oau (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 32 0.28   90 - 117   121 - 124
2 55 0.06   29 - 83
3 148 0.16   118 - 120   125 - 269

Sequence


           _______________________________________________________83_______________________________117____124______________________ 
 2oau(D) : YAVNIVAALAIIIVGLIIARMISNAVNRLMISRKIDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLGGVAGTVL 
         :                                                                                                                          
 2oau(A) : YAVNIVAALAIIIVGLIIARMISNAVNRLMISRKIDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLGGVAGTVL 
           _______________________________________________________83_______________________________117____124______________________ 

           ________________________________________________________________________________________________________________________ 
 2oau(D) : SVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQVKQILTNIIQSEDRILKDREMTVRLNELGASSINFVVRVWSNSGDLQNVYWDVLERIKREFDAAGI 
         :                                                                                                                          
 2oau(A) : SVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQVKQILTNIIQSEDRILKDREMTVRLNELGASSINFVVRVWSNSGDLQNVYWDVLERIKREFDAAGI 
           ________________________________________________________________________________________________________________________ 

           ______________                                                                                                           
 2oau(D) : SFPYPQMDVNFKRV                                                                                                           
         :                                                                                                                          
 2oau(A) : SFPYPQMDVNFKRV                                                                                                           
           ______________                                                                                                           

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		4.8
Translation
(A) 		0.7
Closure
(%) 		54.2
Bending Residues
( green ) 		  83 - 91
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		4.6
Translation
(A) 		-0.1
Closure
(%) 		99.9
Bending Residues
( green ) 		  117 - 118
  120 - 121
  124 - 127
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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