DynDom - Protein Domain Motions

Udp-N-Acetylglucosamine Pyrophosphorylase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Udp-N-Acetylglucosamine Pyrophosphorylase
Conformer 1 (PDB)	1hv9 (B)
Conformer 2 (PDB)	1fwy (B)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	149	0.78	7 - 10 48 - 53 66 - 75 77 - 100 114 - 218
2	123	0.57	11 - 19 28 - 38 54 - 56 76 - 76 226 - 324
3	45	0.62	20 - 27 39 - 47 57 - 64 101 - 113 219 - 225

Sequence

`______10_______19______27_________38_______47____53_________64_________75______________________100__________113_________` `1hv9(B) : NNAMSVVILAAGKGTRMYSDLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGGDLLKQALKDDNLNWVLQAEQLGTGHAMQQAAPFFADDEDILMLYGDVPLISVETLQRLRDAKP` `:` `1fwy(B) : NNAMSVVILAAGKGTRMYSDLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGGDLLKQALKDDNLNWVLQAEQLGTGHAMQQAAPFFADDEDILMLYGDVPLISVETLQRLRDAKP` `______10_______19______27_________38_______47____53_________64_________75______________________100__________113_________` `_____________________________________________________________________________________________218___224__________________` `1hv9(B) : QGGIGLLTVKLDDPTGYGRITRENGKVTGIVEHKDATDEQRQIQEINTGILIANGADMKRWLAKLTNNNAQGEYYITDIIALAYQEGREIVAVHPQRLSEVEGVNNRLQLSRLERVYQSE` `:` `1fwy(B) : QGGIGLLTVKLDDPTGYGRITRENGKVTGIVEHKDATDEQRQIQEINTGILIANGADMKRWLAKLTNNNAQGEYYITDIIALAYQEGREIVAVHPQRLSEVEGVNNRLQLSRLERVYQSE` `_____________________________________________________________________________________________218___224__________________` `________________________________________________________________________________________________________________________` `1hv9(B) : QAEKLLLAGVMLRDPARFDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGPFARLRPGAELLEGAHVGNFVEMKKARLGKGSKAG` `:` `1fwy(B) : QAEKLLLAGVMLRDPARFDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTI**********************************` `________________________________________________________________________________________________________________________` `__________________________________________________________________________________________` `1hv9(B) : HLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRNVGENALAISRVPQTQKEGWRRP` `:` `1fwy(B) : ****************************************************************************************` `__________________________________________________________________________________________`

Morph

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Status: Initialising

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Fixed Domain	Moving Domain	Rotation Angle	Translation (A)	Closure	Bending Residues
1	2	16.5	0.5	99.8	10 - 12 53 - 56 75 - 77	Bending Region Analysis
1	3	11.1	0.4	97.4	47 - 48 64 - 69 100 - 101 113 - 114 218 - 219	Bending Region Analysis
2	3	8.8	-0.4	90.0	19 - 20 27 - 28 38 - 39 54 - 58 224 - 227	Bending Region Analysis