Gtp:amp Phosphotransferase Mitochondrial

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Gtp:amp Phosphotransferase Mitochondrial
  Conformer 1
(PDB) 		2ak3 (B)
  Conformer 2
(PDB) 		2eck (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 170 4.82   8 - 124   161 - 213
2 36 0.98   125 - 160

Sequence


           ________________________________________________________________________________________________________________________ 
 2ak3(B) : gASARLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMTRLVLHELKNLTQYN-WLLDGFPRTLPQAEALDRA-YQIDTVINLNVPFE 
         :                                                                                                                          
 2eck(B) : ******MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDE 
           ________________________________________________________________________________________________________________________ 

           ____124_______________________________158_____________________________________________________________                   
 2ak3(B) : VIKQRLTARWIHPGSGRVYNIEFNPPKTMGIDDLTGEPLVQREDDRPETVVKRLKAYEAQTEPVLEYYRKKGVLETFSGTETNKIWPHVYAFLQTKLPQRSQ                   
         :                                                                                                                          
 2eck(B) : LIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG**                   
           ____121_______________________________155_____________________________________________________________                   

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		98.3
Translation
(A) 		0.3
Closure
(%) 		95.6
Bending Residues
( green ) 		  124 - 126
  158 - 161
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download