Glutamate Receptor Subunit 2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Receptor Subunit 2
  Conformer 1
(PDB) 		1ftj (C)
  Conformer 2
(PDB) 		1my4 (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 141 0.35   6 - 13   15 - 106   137 - 140   171 - 172   194 - 195   219 - 247   255 - 258
2 113 0.28   14 - 14   107 - 136   141 - 170   173 - 193   196 - 218   248 - 254   259 - 259

Sequence


           ________13__________________________________________________________________________________________106_________________ 
 1ftj(C) : KTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIES 
         :                                                                                                                          
 1my4(C) : KTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIES 
           ________13__________________________________________________________________________________________106_________________ 

           __________136_140___________________________170____________________193_____________________217__________________________ 
 1ftj(C) : AEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNE 
         :                                                                                                                          
 1my4(C) : AEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNE 
           __________136_140___________________________170____________________193_____________________217__________________________ 

           _247____254_258___                                                                                                       
 1ftj(C) : QGLLDKLKNKWWYDKGEC                                                                                                       
         :                                                                                                                          
 1my4(C) : QGLLDKLKNKWWYDKGEC                                                                                                       
           _247____254_258___                                                                                                       

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		2.3
Translation
(A) 		-0.1
Closure
(%) 		91.4
Bending Residues
( green ) 		  13 - 15
  106 - 107
  136 - 137
  140 - 141
  170 - 173
  193 - 196
  217 - 219
  247 - 248
  254 - 255
  258 - 259
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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