Glutamate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Dehydrogenase
  Conformer 1
(PDB) 		5xvi (A)
  Conformer 2
(PDB) 		5xvi (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 235 0.6   5 - 192   380 - 411   444 - 458
2 219 0.52   193 - 379   412 - 443

Sequence


           ________________________________________________________________________________________________________________________ 
 5xvi(A) : SNLPHEPEFEQAYKELASTLENSTLFQKNPEYRKALAVVSVPERVIQFRVVWEDDAGNVQVNRGFRVQFNSALGPYKGGLRFHPSVNLSILKFLGFEQIFKNALTGLNMGGGKGGSDFDP 
         :                                                                                                                          
 5xvi(D) : *NLPHEPEFEQAYKELASTLENSTLFQKNPEYRKALAVVSVPERVIQFRVVWEDDAGNVQVNRGFRVQFNSALGPYKGGLRFHPSVNLSILKFLGFEQIFKNALTGLNMGGGKGGSDFDP 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________________________191__________________________________________________ 
 5xvi(A) : KGKSDNEIRRFCVSFMTELCKHIGADTDVPAGDIGVTGREVGFLFGQYRKIRNQWEGVLTGKGGSWGGSLIRPEATGYGVVYYVEHMIAHATNGQESFKGKRVAISGSGNVAQYAALKVI 
         :                                                                                                                          
 5xvi(D) : KGKSDNEIRRFCVSFMTELCKHIGADTDVPAGDIGVTGREVGFLFGQYRKIRNQWEGVLTGKGGSWGGSLIRPEATGYGVVYYVEHMIAHATNGQESFKGKRVAISGSGNVAQYAALKVI 
           ___________________________________________________________________191__________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 5xvi(A) : ELGGSVVSLSDSQGSLIINGEGSFTPEEIELIAQTKVERKQLASIVGAAPFSDANKFKYIAGARPWVHVGKVDVALPSATQNEISGEEAQVLINAGCKFIAEGSNMGCTQEAIDTFEAHR 
         :                                                                                                                          
 5xvi(D) : ELGGSVVSLSDSQGSLIINGEGSFTPEEIELIAQTKVERKQLASIVGAAPFSDANKFKYIAGARPWVHVGKVDVALPSATQNEISGEEAQVLINAGCKFIAEGSNMGCTQEAIDTFEAHR 
           ________________________________________________________________________________________________________________________ 

           _____________377____________________________408________________________________443_________________                      
 5xvi(A) : TANAGAAAIWYAPGKAANAGGVAVSGLEMAQNSARLSWTSEEVDARLKDIMRDCFKNGLETAQEYATPAEGVLPSLVTGSNIAGFTKVAAAMKDQGDWW                      
         :                                                                                                                          
 5xvi(D) : TANAGAAAIWYAPGKAANAGGVAVSGLEMAQNSARLSWTSEEVDARLKDIMRDCFKNGLETAQEYATPAEGVLPSLVTGSNIAGFTKVAAAMKDQGDWW                      
           _____________377____________________________408________________________________443_________________                      

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		19.6
Translation
(A) 		-0.3
Closure
(%) 		99.3
Bending Residues
( green ) 		  191 - 195
  377 - 381
  408 - 415
  443 - 444
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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