Glutamate Receptor 2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Receptor 2
  Conformer 1
(PDB) 		4u2r (A)
  Conformer 2
(PDB) 		4u2r (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 158 0.23   6 - 107   194 - 205   216 - 259
2 96 0.27   108 - 193   206 - 215

Sequence


           _______________________________________________________________________________________________________107______________ 
 4u2r(A) : *NKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPI 
         :                                                                                                                          
 4u2r(C) : ANKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPI 
           _______________________________________________________________________________________________________107______________ 

           _____________________________________________________________________193_________205_______215__________________________ 
 4u2r(A) : ESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGTPVNLAVLKL 
         :                                                                                                                          
 4u2r(C) : ESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGTPVNLAVLKL 
           _____________________________________________________________________193_________205_______215__________________________ 

           ____________________                                                                                                     
 4u2r(A) : SEQGVLDKLKNKWWYDKGEC                                                                                                     
         :                                                                                                                          
 4u2r(C) : SEQGVLDKLKNKWWYDKGEC                                                                                                     
           ____________________                                                                                                     

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		3.7
Translation
(A) 		0.1
Closure
(%) 		12.2
Bending Residues
( green ) 		  107 - 108
  193 - 194
  205 - 206
  215 - 216
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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