Glutamate Receptor 2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Receptor 2
  Conformer 1
(PDB) 		4u2r (B)
  Conformer 2
(PDB) 		4u2r (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 155 0.18   5 - 110   196 - 205   216 - 250   258 - 261
2 102 0.23   111 - 195   206 - 215   251 - 257

Sequence


           ___________________________________________________________________________________________________________110__________ 
 4u2r(B) : GANKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTP 
         :                                                                                                                          
 4u2r(D) : **NKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTP 
           ___________________________________________________________________________________________________________110__________ 

           ________________________________________________________________________195_______205_______215_________________________ 
 4u2r(B) : IESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGTPVNLAVLK 
         :                                                                                                                          
 4u2r(D) : IESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGTPVNLAVLK 
           ________________________________________________________________________195_______205_______215_________________________ 

           _______250____257______                                                                                                  
 4u2r(B) : LSEQGVLDKLKNKWWYDKGECGS                                                                                                  
         :                                                                                                                          
 4u2r(D) : LSEQGVLDKLKNKWWYDKGECGS                                                                                                  
           _______250____257______                                                                                                  

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		2.9
Translation
(A) 		0.0
Closure
(%) 		30.2
Bending Residues
( green ) 		  110 - 111
  195 - 196
  205 - 206
  215 - 216
  250 - 251
  257 - 258
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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