Glutamate Receptor 2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glutamate Receptor 2
  Conformer 1
(PDB) 		4u2r (C)
  Conformer 2
(PDB) 		4u2r (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 134 0.27   5 - 17   27 - 110   217 - 253
2 120 0.49   18 - 26   111 - 216   254 - 258

Sequence


           ______________17__________________________________________________________________________________________110___________ 
 4u2r(C) : ANKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPI 
         :                                                                                                                          
 4u2r(D) : *NKTVVVTTILESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPI 
           ______________17__________________________________________________________________________________________110___________ 

           ____________________________________________________________________________________________216_________________________ 
 4u2r(C) : ESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGTPVNLAVLKL 
         :                                                                                                                          
 4u2r(D) : ESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGTPVNLAVLKL 
           ____________________________________________________________________________________________216_________________________ 

           _______251____________                                                                                                   
 4u2r(C) : SEQGVLDKLKNKWWYDKGEC**                                                                                                   
         :                                                                                                                          
 4u2r(D) : SEQGVLDKLKNKWWYDKGECGS                                                                                                   
           _______251____________                                                                                                   

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		4.5
Translation
(A) 		0.0
Closure
(%) 		80.8
Bending Residues
( green ) 		  17 - 27
  110 - 111
  216 - 220
  251 - 257
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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