DynDom - Protein Domain Motions

Glycosyltransferase Gtfa

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Glycosyltransferase Gtfa
Conformer 1 (PDB)	1pnv (A)
Conformer 2 (PDB)	1pnv (B)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	218	0.68	3 - 202 324 - 325 373 - 388
2	160	1.49	203 - 315 326 - 372

Sequence

`________________________________________________________________________________________________________________________` `1pnv(A) : MRVLITGCGSRGDTEPLVALAARLRELGADARMCLPPDYVERCAEVGVPMVPVGRAVRAGAREPGELPPGAAEVVTEVVAEWFDKVPAAIEGCDAVVTTGLLPAAVAVRSMAEKLGIPYR` `:` `1pnv(B) : MRVLITGCGSRGDTEPLVALAARLRELGADARMCLPPDYVERCAEVGVPMVPVGRAVRAGAREPGELPPGAAEVVTEVVAEWFDKVPAAIEGCDAVVTTGLLPAAVAVRSMAEKLGIPYR` `________________________________________________________________________________________________________________________` `_______________________________________________________________________________202______________________________________` `1pnv(A) : YTVLSPDHLPSEQSQAERDMYNQGADRLFGDAVNSHRASIGLPPVEHLYDYGYTDQPWLAADPVLSPLRPTDLGTVQTGAWILPDERPLSAELEAFLAAGSTPVYVGFGSSSRPATADAA` `:` `1pnv(B) : YTVLSPDHLPSEQSQAERDMYNQGADRLFGDAVNSHRASIGLPPVEHLYDYGYTDQPWLAADPVLSPLRPTDLGTVQTGAWILPDERPLSAELEAFLAAGSTPVYVGFGSSSRPATADAA` `_______________________________________________________________________________202______________________________________` `________________________________________________________________________315_____________________________________________` `1pnv(A) : KMAIKAVRASGRRIVLSRGWADLVLPDDGADCFVVGEVNLQELFGRVAAAIHHDSAGTTLLAMRAGIPQIVVRRV-yHADRVAELGVGVAVDGPVPTIDSLSAALDTALAPEIRARATTV` `:` `1pnv(B) : KMAIKAVRASGRRIVLSRGWADLVLPDDGADCFVVGEVNLQELFGRVAAAIHHDSAGTTLLAMRAGIPQIVVRRVaYHADRVAELGVGVAVDGPVPTIDSLSAALDTALAPEIRARATTV` `________________________________________________________________________315_____________________________________________` `__372___________________` `1pnv(A) : ADTIRADGTTVAAQLLFDAVSLE*` `:` `1pnv(B) : ADTIRADGTTVAAQLLFDAVSLEK` `__372___________________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	14.6
Translation (A)	-0.6
Closure (%)	97.8
Bending Residues ( green )	202 - 203 315 - 326 372 - 374
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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