Gtp:amp Phosphotransferase Mitochondrial

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Gtp:amp Phosphotransferase Mitochondrial
  Conformer 1
(PDB) 		1zd8 (A)
  Conformer 2
(PDB) 		1ank (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 166 4.71   9 - 124   163 - 212
2 38 0.82   125 - 162

Sequence


           ______________________________________________________________________________________________________________________12 
 1zd8(A) : LLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHEL-KNLTQYSWLLDGFPRTLPQAEALDRA-YQIDTVINLNVPFEVIKQR 
         :                                                                                                                          
 1ank(A) : *MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDR 
           ______________________________________________________________________________________________________________________12 

           4__________________________________161_________________________________________________________                          
 1zd8(A) : LTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQREDDKPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGTETNKIWPYVYAFLQTKVPQ*                          
         :                                                                                                                          
 1ank(A) : IVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG                          
           0__________________________________157_________________________________________________________                          

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		89.7
Translation
(A) 		0.9
Closure
(%) 		93.8
Bending Residues
( green ) 		  124 - 127
  161 - 163
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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