Gtp-Sensing Transcriptional Pleiotropic Repressor Cody

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Gtp-Sensing Transcriptional Pleiotropic Repressor Cody
  Conformer 1
(PDB) 		2b18 (A)
  Conformer 2
(PDB) 		2gx5 (C)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 102 1.52   6 - 48   69 - 87   111 - 150
2 20 1.25   49 - 68

Sequence


           _______________________________________________48________________66_____________________________________________________ 
 2b18(A) : *MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLFNVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGG 
         :                                                                                                                          
 2gx5(C) : HMALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLFNVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGG 
           _______________________________________________48________________66_____________________________________________________ 

           _________________________________________                                                                                
 2b18(A) : GERLGTLILSRLQDQFNDDDLILAEYGATVVGMEIL*****                                                                                
         :                                                                                                                          
 2gx5(C) : GERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE                                                                                
           _________________________________________                                                                                

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		25.9
Translation
(A) 		-0.4
Closure
(%) 		97.8
Bending Residues
( green ) 		  48 - 49
  66 - 69
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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