Protease/helicase Ns3

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Protease/helicase Ns3
  Conformer 1
(PDB) 		1hei (A)
  Conformer 2
(PDB) 		8ohm  
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 289 0.93   192 - 326   433 - 448   485 - 622
2 142 1.15   327 - 432   449 - 484

Sequence


           ________________________________________________________________________________________________________________________ 
 1hei(A) : NSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGVDPNIRTGVRTITTGSPITYSTYGKFLADGGCSGGAYDIIICDECHSTDATSILGIGTV 
         :                                                                                                                          
 8ohm    : ***PPAVPQTFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGVYMSKAHGIDPNIRTGVRAITTGGPITYSTYGKFLADGGCSGGAYDIIICDECHSTDSTSILGIGTV 
           ________________________________________________________________________________________________________________________ 

           _________________326____________________________________________________________________________________________________ 
 1hei(A) : LDQAETAGARLVVLATATPPGSVTVSHPNIEEVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTNGDVVVVSTDALMTGFTGDFDSVI 
         :                                                                                                                          
 8ohm    : LDQAETAGARLVVLATATPPGSVTVPHPNIEEVALSNTGEIPFYGKAIPIEVIRGGRHLIFCHSKKKCDELAAKLSALGLNAVAYYRGLDVSVIPTSGDVVVVATDALMTGYTGDFDSVI 
           _________________326____________________________________________________________________________________________________ 

           ___432_____________448_________________________________484______________________________________________________________ 
 1hei(A) : DCNTCVTQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRTGRGKPGIYRFVAPGERPSGMFDSSVLCECYDAGCAWYELMPAETTVRLRAYMNTPGLPVCQDHLEFWEGVFTGLTHIDAHF 
         :                                                                                                                          
 8ohm    : DCNTCVTQTVDFSLDPTFTIDTTTVPQDAVSRSQRRGRTGRGRRGIYRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLTHIDAHF 
           ___432_____________448_________________________________484______________________________________________________________ 

           ___________________________________________________________________________________                                      
 1hei(A) : LSQTKQSGENFPYLVAYQATVCARAQAPPPSWDQMWKCLIRLKPTLHGPTPLLYRLGAVQNEVTLTHPITKYIMTCMSADLEV                                      
         :                                                                                                                          
 8ohm    : LSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKSLTRLKPTLHGPTPLLYRLGALQNEVTLTHPVTKFIMACMS*****                                      
           ___________________________________________________________________________________                                      

Morph
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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		20.3
Translation
(A) 		-0.9
Closure
(%) 		100.0
Bending Residues
( green ) 		  326 - 327
  432 - 433
  448 - 449
  484 - 485
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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