Homoserine Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Homoserine Kinase
  Conformer 1
(PDB) 		1rku (B)
  Conformer 2
(PDB) 		1rkv (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 143 0.31   3 - 14   59 - 60   64 - 114   126 - 203
2 58 0.91   15 - 58   61 - 63   115 - 125

Sequence


           _____________14__________________________________________58___63________________________________________________114_____ 
 1rku(B) : DMEIACLDLEGVLVPEIWIAFAEKTGIDALKATTRDIPDYDVLMKQRLRILDEHGLKLGDIQEVIATLKPLEGAVEFVDWLRERFQVVILSDTFYEFSQPLMRQLGFPTLLCHKLEIDDS 
         :                                                                                                                          
 1rkv(A) : DMEIACLDLEGVLVPEIWIAFAEKTGIDALKATTRDIPDYDVLMKQRLRILDEHGLKLGDIQEVIATLKPLEGAVEFVDWLRERFQVVILSDTFYEFSQPLMRQLGFPTLLCHKLEIDDS 
           _____________14__________________________________________58___63________________________________________________114_____ 

           ___125________________________________________________________________________________                                   
 1rku(B) : DRVVGYQLRQKDPKRQSVIAFKSLYYRVIAAGDSYNDTTMLSEAHAGILFHAPENVIREFPQFPAVHTYEDLKREFLKASSRSLSL                                   
         :                                                                                                                          
 1rkv(A) : DRVVGYQLRQKDPKRQSVIAFKSLYYRVIAAGDSYNDTTMLSEAHAGILFHAPENVIREFPQFPAVHTYEDLKREFLKASSRSLSL                                   
           ___125________________________________________________________________________________                                   

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		10.1
Translation
(A) 		0.4
Closure
(%) 		99.9
Bending Residues
( green ) 		  14 - 15
  58 - 61
  63 - 65
  114 - 115
  125 - 126
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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