Hydrogen Peroxide-Inducible Genes Activator

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hydrogen Peroxide-Inducible Genes Activator
  Conformer 1
(PDB) 		6g1b (J)
  Conformer 2
(PDB) 		6g1d (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 218 3.52   90 - 315
2 84 0.86   6 - 89

Sequence


           _____________________________________________________________________________________89_________________________________ 
 6g1b(J) : *KEYRPTLAQLRTFVTIAECKHFGTAATKLSISQPSLSQALVALETGLGVQLIERSTRKVIVTPAGEKLLPFAKSTLDAAESFLSHAK--nGSLTGPLTVGIIPTAAPYILPS-lSIVDE 
         :                                                                                                                          
 6g1d(A) : NKEYRPTLAQLRTFVTIAECKHFGTAATKLSISQPSLSQALVALETGLGVQLIERSTRKVIVTPAGEKLLPFAKSTLDAAESFLSHAKGANGSLTGPLTVGIIPTAAPYILPSMLSIVDE 
           _____________________________________________________________________________________89_________________________________ 

           ________________________________________________________________________________________________________________________ 
 6g1b(J) : EYPDLEPHIVEDQTKHLLALLRDGAIDVAMMALPSEAPGMKEIPLYDEDFIVVTASDHPFAGRQDLELSALEDLDLLLLDDGHCLHDQIVDLCRt-----AVTRASSLTTVMQLVVAGLG 
         :                                                                                                                          
 6g1d(A) : EYPDLEPHIVEDQTKHLLALLRDGAIDVAMMALPSEAPGMKEIPLYDEDFIVVTASDHPFAGRQDLELSALEDLDLLLLDDGHSLHDQIVDLCRRGDINPaVTRASSLTTVMQLVVAGLG 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________________________                                            
 6g1b(J) : STLVPISAIPWECTRPGLATANFNSDVTANRRIGLVYRSSSSRAEEFEQFALILQRAFQEAVALAASTGITLKQNVA                                            
         :                                                                                                                          
 6g1d(A) : STLVPISAIPWECTRPGLATANFNSDVTANRRIGLVYRSSSSRAEEFEQFALILQRAFQEAVALAASTGITLKQN**                                            
           _____________________________________________________________________________                                            

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		58.8
Translation
(A) 		3.2
Closure
(%) 		71.6
Bending Residues
( green ) 		  89 - 90
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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