Kdp Operon Transcriptional Regulatory Protein Kdpe

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Kdp Operon Transcriptional Regulatory Protein Kdpe
  Conformer 1
(PDB) 		4kfc (A)
  Conformer 2
(PDB) 		4kny (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 120 1.43   2 - 124
2 99 0.73   125 - 223

Sequence


           ____________________________________________________________________________________________________________________118_ 
 4kfc(A) : AMANVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 
         :                                                                                                                          
 4kny(B) : AMANVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 
           ____________________________________________________________________________________________________________________118_ 

           __________________________________________________________________________________________________________               
 4kfc(A) : Sa---PDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITATGIGYRFML               
         :                                                                                                                          
 4kny(B) : SATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML               
           __________________________________________________________________________________________________________               

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		158.2
Translation
(A) 		-8.0
Closure
(%) 		47.8
Bending Residues
( green ) 		  118 - 128
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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