L-3-Hydroxyacyl-Coa Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name L-3-Hydroxyacyl-Coa Dehydrogenase
  Conformer 1
(PDB) 		1f14 (B)
  Conformer 2
(PDB) 		1m75 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 185 0.7   14 - 198
2 102 0.4   199 - 300

Sequence


           ________________________________________________________________________________________________________________________ 
 1f14(B) : KIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDECVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTI 
         :                                                                                                                          
 1m75(B) : KIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTI 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________198_____________________________________________________ 
 1f14(B) : FASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLD 
         :                                                                                                                          
 1m75(B) : FASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVSRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLD 
           ________________________________________________________________198_____________________________________________________ 

           ___________________________________________________                                                                      
 1f14(B) : YVGLDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK                                                                      
         :                                                                                                                          
 1m75(B) : YVGLDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK                                                                      
           ___________________________________________________                                                                      

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		15.2
Translation
(A) 		0.2
Closure
(%) 		89.4
Bending Residues
( green ) 		  198 - 207
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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