Lysozyme

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Lysozyme
  Conformer 1
(PDB) 		3dmv (A)
  Conformer 2
(PDB) 		173l  
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 100 0.76   3 - 12   71 - 160
2 58 0.7   13 - 70

Sequence


           __3________________________________________________________________69___________________________________________________ 
 3dmv(A) : MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAAAINMVFQMGETGVAGFTNSLRM 
         :                                                                                                                          
 173l    : MNIFEMLRIDEGLRLEIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLEM 
           __3________________________________________________________________69___________________________________________________ 

           ____________________________________________                                                                             
 3dmv(A) : LQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYKNL                                                                             
         :                                                                                                                          
 173l    : LQQKRWDEAAVNLAESRWYNQTPNRAERVITTFRTGTWDAYK**                                                                             
           ____________________________________________                                                                             

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		37.4
Translation
(A) 		-1.7
Closure
(%) 		53.5
Bending Residues
( green ) 		  3 - 14
  69 - 79
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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