DynDom - Protein Domain Motions

Methyltransferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Methyltransferase
Conformer 1 (PDB)	5f8c (C)
Conformer 2 (PDB)	5f8f (B)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	220	0.65	7 - 137 246 - 247 253 - 256 267 - 268 270 - 270 272 - 350 352 - 353
2	126	0.51	138 - 245 248 - 252 257 - 266 269 - 269 271 - 271 351 - 351

Sequence

`________________________________________________________________________________________________________________________` `5f8c(C) : ********METTEEFGNRFVAAIDSAGLAILVSVGHQTGLLDTMAGLPPATSMEIAEAAGLEERYVREWLGGMTTGQIVEYDAGSSTYSLPAHRAGMLTRAAGPDNLAVIAQFVSLLG` `:` `5f8f(B) : SSGLVPRGSHMETTEEFGNRFVAAIDSAGLAILVSVGHQTGLLDTMAGLPPATSMEIAEAAGLEERYVREWLGGMTTGQIVEYDAGSSTYSLPAHRAGMLTRAAGPDNLAVIAQFVSLLG` `________________________________________________________________________________________________________________________` `____________________137_________________________________________________________________________________________________` `5f8c(C) : EVEQKVIRCFREGGGVPYSEYPRFHKLMAEMSGMVFDAALIDVVLPLVDGLPDRLRSGADVADFGCGSGRAVKLMAQAFGASRFTGIDFSDEAVAAGTEEAARLGLANATFERHDLAELD` `:` `5f8f(B) : EVEQKVIRCFREGGGVPYSEYPRFHKLMAEMSGMVFDAALIDVVLPLVDGLPDRLRSGADVADFGCGSGRAVKLMAQAFGASRFTGIDFSDEAVAAGTEEAARLGLANATFERHDLAELD` `____________________137_________________________________________________________________________________________________` `________245____252_256_______266________________________________________________________________________________350_____` `5f8c(C) : KVGAYDVITVFDAIHDQAQPARVLQNIYRALRPGGVLLMVDIKASSQLEDNVGVPLSTYLYTTSLMHmTVSLALDGAGLGTVWGRQLATSMLADAGFTDVTVAEIESDVLNNYYIARKLE` `:` `5f8f(B) : KVGAYDVITVFDAIHDQAQPARVLQNIYRALRPGGVLLMVDIKASSQLEDNVGVPLSTYLYTTSLMHmTVSLALDGAGLGTVWGRQLATSMLADAGFTDVTVAEIESDVLNNYYIARKLE` `________245____252_256_______266________________________________________________________________________________350_____` `___` `5f8c(C) : HHH` `:` `5f8f(B) : *` `___`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	6.0
Translation (A)	0.1
Closure (%)	97.7
Bending Residues ( green )	137 - 151 245 - 248 252 - 253 256 - 257 266 - 272 350 - 352
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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