N-Methyl-D-Aspartate Receptor Subunit 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name N-Methyl-D-Aspartate Receptor Subunit 1
  Conformer 1
(PDB) 		1pb7 (A)
  Conformer 2
(PDB) 		4nf4 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 173 0.77   6 - 144   240 - 285
2 95 0.78   145 - 239

Sequence


           ________________________________________________________________________________________________________________________ 
 1pb7(A) : TRLKIVTIHQEPFVYVKPTMSDGTCKEEFTVNGDPVKKVICTGPN-----hTVPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAPLT 
         :                                                                                                                          
 4nf4(A) : TRLKIVTIHQEPFVYVKPTMSDGTCKEEFTVNGDPVKKVICTGPNDgSPRHTVPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERV----kKEWNGMMGELLSGQADMIVAPLT 
           ________________________________________________________________________________________________________________________ 

           _____________142______________________________________________________________________________________________239_______ 
 1pb7(A) : INNERAQYIEFSKPFKYQGLTILVKKGTRITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFF 
         :                                                                                                                          
 4nf4(A) : INNERAQYIEFSKPFKYQGLTILVKKGTRITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFF 
           _____________142______________________________________________________________________________________________239_______ 

           ______________________________________________                                                                           
 1pb7(A) : RSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRYQECDS                                                                           
         :                                                                                                                          
 4nf4(A) : RSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRY*****                                                                           
           ______________________________________________                                                                           

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		26.4
Translation
(A) 		1.4
Closure
(%) 		99.4
Bending Residues
( green ) 		  142 - 146
  239 - 247
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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