Nodulation Fucosyltransferase Nodz

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Nodulation Fucosyltransferase Nodz
  Conformer 1
(PDB) 		2hhc (A)
  Conformer 2
(PDB) 		3six (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 178 0.18   5 - 160   258 - 265   268 - 273   290 - 297
2 106 0.49   161 - 257   266 - 267   274 - 289   298 - 314

Sequence


           ________________________________________________________________________________________________________________________ 
 2hhc(A) : TKERFVISRRRTGFGDCLWSLASAWSYAQRTGRTLVIDWRGSCYVEQPFSNAFPAFFEPVEDIAGVPVICDDRVNQLSFPGPFFPRWWNRPSIDCINRPDEQIFRERDELTELFQAREDS 
         :                                                                                                                          
 3six(A) : *KERFVISRRRTGFGDCLWSLASAWSYAQRTGRTLVIDWRGSCYVEQPFSNAFPAFFEPVEDIAGVPVICDDRVNQLSFPGPFFPRWWNRPSIDCINRPDEQIFRERDELTELFQAREDS 
           ________________________________________________________________________________________________________________________ 

           ____________________________________160___________________________________________________________________242__________2 
 2hhc(A) : EANTIVCDACLMWRCSEEAERLIFRNIKLRSEIRARIDALYEEHFSGHSIIGVHVRHwADSELALHQVCMAIRKAKALSYPKPVKVFLCTDSAQVLDQVSGLFPDVFAVPK-sAEMGIEG 
         :                                                                                                                          
 3six(A) : EANTIVCDACLMWRCSEEAERLIFRNIKLRSEIRARIDALYEEHFSGHSIIGVHVRH-aDSELALHQVCMAIRKAKALSYPKPVKVFLCTDSAQVLDQVSGLFPDVFAVPKRsAEMGIEG 
           ____________________________________160___________________________________________________________________242__________2 

           65_____273_____________289_____297____________________                                                                   
 2hhc(A) : GASALIDMYLLARCATVIRFPPTSAFTRYARLLVPRIIEFD--nPGHLTMIDNP                                                                   
         :                                                                                                                          
 3six(A) : GASALIDMYLLARCATVIRFPPTSAFTRYARLLVPRIIEFDLSNPGHLTMIDNP                                                                   
           65_____273_____________289_____297____________________                                                                   

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		2.9
Translation
(A) 		0.1
Closure
(%) 		98.9
Bending Residues
( green ) 		  160 - 161
  242 - 262
  265 - 268
  273 - 274
  289 - 290
  297 - 298
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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