Nucleoside Diphosphate Kinase A

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Nucleoside Diphosphate Kinase A
  Conformer 1
(PDB) 		1jxv (A)
  Conformer 2
(PDB) 		2hvd (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 119 0.41   8 - 50   73 - 148
2 22 0.45   51 - 72

Sequence


           ______________________________________________49____________________71__________________________________________________ 
 1jxv(A) : **CERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSD 
         :                                                                                                                          
 2hvd(A) : ANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSD 
           ______________________________________________49____________________71__________________________________________________ 

           _______________________________                                                                                          
 1jxv(A) : SVESAEKEIGLWFHPEELVDYTSCAQNWIYE                                                                                          
         :                                                                                                                          
 2hvd(A) : SVESAEKEIGLWFHPEELVDYTSCAQNWIYE                                                                                          
           _______________________________                                                                                          

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		6.5
Translation
(A) 		-0.3
Closure
(%) 		97.0
Bending Residues
( green ) 		  49 - 52
  71 - 73
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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