Orotidine 5'-Phosphate Decarboxylase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Orotidine 5'-Phosphate Decarboxylase
  Conformer 1
(PDB) 		2czd (A)
  Conformer 2
(PDB) 		2cze (B)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 122 0.7   29 - 147   160 - 162
2 65 0.56   5 - 28   148 - 159   174 - 202

Sequence


           __________________________28____________________________________________________________________________________________ 
 2czd(A) : MIVLALDVYEGERAIKIAKSVKDYISMIKVNWPLILGSGVDIIRRLKEETGVEIIADLKLADIPNTNRLIARKVFGAGADYVIVHTFVGRDSVMAVKELGEIIMVVEMSHPGALEFINPL 
         :                                                                                                                          
 2cze(B) : MIVLALDVYEGERAIKIAKSVKDYISMIKVNWPLILGSGVDIIRRLKEETGVEIIADLKLADIPNTNRLIARKVFGAGADYVIVHTFVGRDSVMAVKELGEIIMVVEMSHPGALEFINPL 
           __________________________28____________________________________________________________________________________________ 

           ___________________142____________157___________________________________________________                                 
 2czd(A) : TDRFIEVANEIEPFGVIAPGTRPERIGYIRDRLKEGIKILAPGIGAQGGKAKDAVKAGADYIIVGRAIYNAPNPREAAKAIYDEIR**                                 
         :                                                                                                                          
 2cze(B) : TDRFIEVANEIEPFGVIAPGTRPERIGYIRDRLKEGIKILAPGIGAQGGKAKDAVKAGADYIIVGRAIYNAPNPREAAKAIYDEIRGV                                 
           ___________________142____________157___________________________________________________                                 

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		10.5
Translation
(A) 		-0.2
Closure
(%) 		87.8
Bending Residues
( green ) 		  28 - 29
  142 - 150
  157 - 178
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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