Phosphoenolpyruvate Carboxykinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Phosphoenolpyruvate Carboxykinase
  Conformer 1
(PDB) 		1oen  
  Conformer 2
(PDB) 		1ayl  
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 351 0.98   8 - 236   253 - 255   265 - 356   408 - 434
2 169 1.67   237 - 252   256 - 264   357 - 407   435 - 538

Sequence


           ________________________________________________________________________________________________________________________ 
 1oen    : *****GLTPQELEAYGISDVHDIVYNPSYDLLYQEELDPSLTGYERGVLTNLGAVAVDTGIFTGRSPKDKYIVRDDTTRDTFWWADKGKGKNDNKPLSPETWQHLKGLVTRQLSGKRLFV 
         :                                                                                                                          
 1ayl    : MRVNNGLTPQELEAYGISDVHDIVYNPSYDLLYQEELDPSLTGYERGVLTNLGAVAVDTGIFTGRSPKDKYIVRDDTTRDTFWWADKGKGKNDNKPLSPETWQHLKGLVTRQLSGKRLFV 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________________________________________________________________236____ 
 1oen    : VDAFCGANPDTRLSVRFITEVAWQAHFVKNMFIRPSDEELAGFKPDFIVMNGAKCTNPQWKEQGLNSENFVAFNLTERMQLIGGTWYGGEMKKGMFSMMNYLLPLKGIASMHCSANVGEA 
         :                                                                                                                          
 1ayl    : VDAFCGANPDTRLSVRFITEVAWQAHFVKNMFIRPSDEELAGFKPDFIVMNGAKCTNPQWKEQGLNSENFVAFNLTERMQLIGGTWYGGEMKKGMFSMMNYLLPLKGIASMHCSANVGEK 
           _________________________________________________________________________________________________________________236____ 

           _________252_________264_________________________________________________________________________________________356____ 
 1oen    : GDVAVFFGLSGSGKTTLSTDPARRLIGDDEHGWDDDGVFNFEGGSYAKTIKLSKEAEPEIYAAIRRDALLENVTVRAGGTIDFDDGSKTENTRVSYPIYHIDNIVKPVSKAGHATKVIFL 
         :                                                                                                                          
 1ayl    : GDVAVFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDDGVFNFEGGCYAKTIKLSKEAEPEIYNAIRRDALLENVTVREDGTIDFDDGSKTENTRVSYPIYHIDNIVKPVSKAGHATKVIFL 
           _________252_________264_________________________________________________________________________________________356____ 

           ____________________________________407________________________434______________________________________________________ 
 1oen    : TADAFGVLPPVSRLTADQTQYHFLSGFTAAAApTPTFSACFGAAFLSLHPTQYAEVLVKRMQAAGAQAYLVNTGWNGTGKRISAADTRAIIDAILNGSLDNAETFTLPMFNLAIPTELPG 
         :                                                                                                                          
 1ayl    : TADAFGVLPPVSRLTADQTQYHFLSGFTAKLApTPTFSACFGAAFLSLHPTQYAEVLVKRMQAAGAQAYLVNTGWNGTGKRISIKDTRAIIDAILNGSLDNAETFTLPMFNLAIPTELPG 
           ____________________________________407________________________434______________________________________________________ 

           ____________________________________________________                                                                     
 1oen    : VDTGILDPRNTYaG---WQEKAETLAKLFIDNFDKYTDTPAGAALVAAGPAL                                                                     
         :                                                                                                                          
 1ayl    : VDTKILDPRNTYASPEQWQEKAETLAKLFIDNFDKYTDTPAGAALVAAGPKL                                                                     
           ____________________________________________________                                                                     

Morph
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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		19.0
Translation
(A) 		0.2
Closure
(%) 		99.9
Bending Residues
( green ) 		  236 - 237
  252 - 253
  255 - 256
  264 - 265
  356 - 357
  407 - 408
  434 - 435
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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