Phosphoglycerate Kinase, Testis Specific

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Phosphoglycerate Kinase, Testis Specific
  Conformer 1
(PDB) 		2paa (A)
  Conformer 2
(PDB) 		13pk (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 199 3.09   7 - 198   393 - 413
2 192 1.8   199 - 392

Sequence


           ________________________________________________________________________________________________________________________ 
 2paa(A) : AKLTLDKVDLKGKRVIMRVDFNVPMKNNQITNNQRIKAAIPSIKHCLDNGAKSVVLMSHLGRPDGIPM------------P---DKYSLEPVADELKSLLNKDVIFLKDCVGPEVEQACA 
         :                                                                                                                          
 13pk(A) : EKKSINECDLKGKKVLIRVDFNVPVKNGKITNDYRIRSALPTLKKVLTEGG-SCVLMSHLGRPKGIPMAQAGKIRSTGGVPGFQQKATLKPVAKRLSELLLRPVTFAPDCLNAADVVSKM 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________________________________________198____________________________ 
 2paa(A) : NPDNGSIILLENLRFHVEEEGKGKDSSGKKISADPAKVEAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVN--LPQKASGFLMKKELDYFSKALEKPERPFLAILGGAKVKDKIQLIKNM 
         :                                                                                                                          
 13pk(A) : SP--GDVVLLENVRFYKEE--------GSKKAKDR---EAMAKILASYGDVYISDAFGTAHRDSATMTGIPKILGNGAAGYLMEKEISYFAKVLGNPPRPLVAIVGGAKVSDKIQLLDNM 
           _________________________________________________________________________________________202____________________________ 

           ________________________________________________________________________________________________________________________ 
 2paa(A) : LDKVNFMIIGGGMAYTFLKELKNMQIGASLFDEEGATIVKEIMEKAEKNGVKIVFPVDFVTGDKFDENAKVGQATIESGIPSGWMGLDCGPESIKINAQIVAQAKLIVWNGPIGVFEWDA 
         :                                                                                                                          
 13pk(A) : LQRIDYLLIGGAMAYTFLKA-QGYSIGKSKCEESKLEFARSLLKKAEDRKVQVILPIDHVCHTEF-KAVDSPLITEDQNIPEGHMALDIGPKTIEKYVQTIGKCKSAIWNGPMGVFEMVP 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________392________________________                                                  
 2paa(A) : FAKGTKALMDEVVKATS-NGCVTIIGGGDTATCCAKWGTEDKVSHVSTGGGASLELLEGKILPGVEALSNM                                                  
         :                                                                                                                          
 13pk(A) : YSKGTFAIAKAMGRGTHEHGLMSIIGGGDSASAAELSGEAKRMSHVSTGGGASLELLEGKTLPGVTVLDDK                                                  
           ____________________________________________395________________________                                                  

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		28.1
Translation
(A) 		-2.0
Closure
(%) 		93.7
Bending Residues
( green ) 		  198 - 199
  392 - 393
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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