Phosphoglucosamine Mutase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Phosphoglucosamine Mutase
  Conformer 1
(PDB) 		3pdk (A)
  Conformer 2
(PDB) 		6gyz (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 397 1.11   5 - 371   384 - 392   400 - 408   420 - 425   434 - 434   437 - 438   442 - 444
2 43 0.85   372 - 383   393 - 399   409 - 419   426 - 433   435 - 436   439 - 441

Sequence


           ________________________________________________________________________________________________________________________ 
 3pdk(A) : GKYFGTDGVRGVANKELTPELAFKIGRFGGYVLTKDTDRPKVIIGRDTRISGHMLEGALVAGLLSTGAEVMRLGVISTPGVAYLTKALDAQAGVMISASHNPVQDNGIKFFGSDGFKLTD 
         :                                                                                                                          
 6gyz(B) : *KYFGTDGVRGVANQELTPELAFKLGRYGGYVLAHNKGEPRVLVGRDTRVSGEMLESALIAGLISIGAEVMRLGIISTPGVAYLTRDMGAELGVMISASHNPVADNGIKFFGSDGFKLSD 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3pdk(A) : EQEAEIEALLDKEVDELPRPTGTNLGQVSDYFEGGQKYLQYIKQTVEEDFSGLHIALDCAHGATSSLAPYLFADLEADISTMGTSPNGMNINDGVGSTHPEVLAELVKEKGADIGLAFDG 
         :                                                                                                                          
 6gyz(B) : EQENEIEALLDQENPELPRPVGNDIVHYSDYFEGAQKYLSYLKSTVDVNFEGLKIALDGANGSTSSLAPFLFGDLEADTETIGCSPDGYNINEKCGSTHPEKLAEKVVETESDFGLAFDG 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3pdk(A) : DGDRLIAVDEKGNIVDGDQIMFICAKYMKETGQLKHNTVVSTVMSNLGFYKALEANGITSDKTAVGDRYVMEEMKRGGYNLGGEQSGHIILLDYITTGDGMLSALQLVNIMKMTKKPLSE 
         :                                                                                                                          
 6gyz(B) : DGDRIIAVDENGQIVDGDQIMFIIGQEMHKNQELNNDMIVSTVMSNLGFYKALEQEGIKSNKTKVGDRYVVEEMRRGNYNLGGEQSGHIVMMDYNTTGDGLLTGIQLASVIKMTGKSLSE 
           ________________________________________________________________________________________________________________________ 

           _______371_________383__388________399_________________419___425_____433_____441_______                                  
 3pdk(A) : LAGEMTKFPQLLVNVRVTDKKLALENEKIKEIIRVVEEEMNGDGRILVRPSGTEPLIRVMAEAPTQEVCDAYVHRIVEVVKAEVG**                                  
         :                                                                                                                          
 6gyz(B) : LAGQMKKYPQSLINVRVTDKYRVEENVDVKEVMTKVEVEMNGEGRILVRPSGTEPLVRVMVEAATDEDAERFAQQIADVVQDKMGLD                                  
           _______373_________385__390________401_________________421___427_____435_____443_______                                  

Morph
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		12.6
Translation
(A) 		-0.7
Closure
(%) 		84.2
Bending Residues
( green ) 		  371 - 372
  383 - 384
  388 - 393
  399 - 409
  419 - 420
  425 - 426
  433 - 439
  441 - 442
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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