DynDom - Protein Domain Motions

Phytochrome-Like Protein Cph1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Phytochrome-Like Protein Cph1
Conformer 1 (PDB)	2vea (A)
Conformer 2 (PDB)	3zq5 (A)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	321	1.33	7 - 315 449 - 477
2	172	0.78	316 - 448 478 - 516

Sequence

`________________________________________________________________________________________________________________________` `2vea(A) : TVQLSDQSLRQLETLAIHTAHLIQPHGLVVVLQEPDLTISQISANCTGILGRSPEDLLGRTLGEVFDSF--------lTAGQISSLNPSKLWARVM--dFVIFDGVFHRNSDGLLVCE` `:` `3zq5(A) : ATTVQLSDQSLRQLETLAIHTAHLIQPHGLVVVLQEPDLTISQISANCTGILGRSPEDLLGRTLGEVFDSFQIDPIQSRLTAGQISSLNPSKLWARVMGDDFVIFDGVFHRNSDGLLVCE` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `2vea(A) : LEPAYTSDNLPFLGFYHMANAALNRL----nLRDFYDVIVEEVRRMTGFDRVMLYRFDENNHGDVIAEDKRDDMEPYLGLHYPESDIPQPARRLFIHNPIRVIPDVYGVAVPLTPAVNPS` `:` `3zq5(A) : LEPAYTSDNLPFLGFYHMANAALNRLRQQANLRDFYDVIVEEVRRMTGFDRVMLYRFDENNHGDVIAEDKRDDMEPYLGLHYPESDIPQPARRLFIHNPIRVIPDVYGVAVPLTPAVNPS` `________________________________________________________________________________________________________________________` `_______________________________________________________________________315______________________________________________` `2vea(A) : TNRAVDLTESILRSAYHCHLTYLKNMGVGASLTISLIKDGHLWGLIACHHQTPKVIPFELRKACEFFGRVVFSNISAQEDTETFDYRVQLAEHEAVLLDKMTTAADFVEGLTNHPDRLLG` `:` `3zq5(A) : TNRAVDLTESILRSAYHCHLTFLKNMGVGASLTISLIKDGHLWGLIACHHQTPKVIPFELRKACEFFGRVVFSNISAQEDTETFDYRVQLAEHEAVLLDKMTTAADFVEGLTNHPDRLLG` `_______________________________________________________________________315______________________________________________` `____________________________________________________________________________________448______________________473________` `2vea(A) : LTGSQGAAICFGEKLILVGETPDEKAVQYLLQWLENREVQDVFFTSSLSQIYPDAVNFKSVASGLLAIPIARHNFLLWFRPEVLQTVNWGGDPNHAYEATQ---kIELHPRQSFDLWKEI` `:` `3zq5(A) : LTGSQGAAICFGEKLILVGETPDEKAVQYLLQWLENREVQDVFFTSSLSQIYPDAVNFKSVASGLLAIPIARHNFLLWFRPEVLQTVNWGGDPNHAYEATQEDGKIELHPRQSFDLWKEI` `____________________________________________________________________________________448______________________473________` `_______________________________________` `2vea(A) : VRLQSLPWQSVEIQSALALKKAIVNLILRQAEEHHHHHH` `:` `3zq5(A) : VRLQSLPWQSVEIQSALALKKAIVNLILRQAEEHHHH` `_______________________________________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	20.0
Translation (A)	-1.6
Closure (%)	99.3
Bending Residues ( green )	315 - 316 448 - 449 473 - 479
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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