Potassium Channel

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Potassium Channel
  Conformer 1
(PDB) 		2wlj (A)
  Conformer 2
(PDB) 		2wli (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 176 1.76   14 - 37   137 - 294
2 99 0.69   38 - 136

Sequence


           _____________26____________________________________________________________________________________________________134__ 
 2wlj(A) : PRILNSDGSSNITRLGl-DDHYHDLLTVSWPVFITLITGLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFT 
         :                                                                                                                          
 2wli(A) : PRILNSDGSSNITRLGLlDDHYHDLLTVSWPVFITLITGLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFT 
           _____________26____________________________________________________________________________________________________134__ 

           ________________________________________________________________________________________________________________________ 
 2wlj(A) : RPTAGVLFSSRMVISDFEGKPTLMMRLANLRIEQIIEADVHLVLVRSEISQEGMVFRRFHDLTLTRSRSPIFSLSWTVMHPIDHHSPIYGETDETLRNSHSEFLVLFTGHHEAFAQNVHA 
         :                                                                                                                          
 2wli(A) : RPTAGVLFSSRMVISDFEGKPTLMMRLANLRIEQIIEADVHLVLVRSEISQEGMVFRRFHDLTRTRSRSPIFSLSWTVMHPIDHHSPIYGETDETLRNSHSEFLVLFTGHHEAFAQNVHA 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________                                                                              
 2wlj(A) : RHAYSCDEIIWGGHFVDVFTTLPDGRRALDLGKFHEIAQHHHH                                                                              
         :                                                                                                                          
 2wli(A) : RHAYSCDEIIWGGHFVDVFTTLPDGRRALDLGKFHEIAQHHHH                                                                              
           ___________________________________________                                                                              

Morph
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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		23.3
Translation
(A) 		0.2
Closure
(%) 		10.1
Bending Residues
( green ) 		  26 - 42
  134 - 137
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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