Predicted Glycosyltransferases

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Predicted Glycosyltransferases
  Conformer 1
(PDB) 		3c48 (B)
  Conformer 2
(PDB) 		3c4v (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 196 0.65   3 - 196   391 - 407
2 185 0.75   197 - 390

Sequence


           ________________________________________________________________________________________________________________________ 
 3c48(B) : MRVAMISMHTSPLQQ-------gMNVYILSTATELAKQGIEVDIYTRATRPSQGEIVRVAENLRVINIAAGPYEGLSKEELPTQLAAFTGGMLSFTRREKVTYDLIHSHYWLSGQVGWLL 
         :                                                                                                                          
 3c4v(B) : MRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQGIEVDIYTRATRPSQGEIVRVAENLRVINIAAGPYEGLSKEELPTQLAAFTGGMLSFTRREKVTYDLIHSHYWLSGQVGWLL 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________________195____________________________________________________ 
 3c48(B) : RDLWRIPLIHTAHTLAAVK-tPESEARRICEQQLVDNADVLAVNTQEEMQDLMHHYDADPDRISVVSPGADVELYSPGNDRATERSRRELGIPLHTKVVAFVGRLQPFKGPQVLIKAVAA 
         :                                                                                                                          
 3c4v(B) : RDLWRIPLIHTAHTLAAVsDTPESEARRICEQQLVDNADVLAVNTQEEMQDLMHHYDADPDRISVVSPGADVELYSPGNDRATERSRRELGIPLHTKVVAFVGRLQPFKGPQVLIKAVAA 
           _________________________________________________________________195____________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3c48(B) : LFDRDPDRNLRVIICGGPStYRHMAEELGVEKRIRFLDPRPPSELVAVYRAADIVAVPSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALATLLDDDET 
         :                                                                                                                          
 3c4v(B) : LFDRDPDRNLRVIICGGP--yRHMAEELGVEKRIRFLDPRPPSELVAVYRAADIVAVPSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALATLLDDDET 
           ________________________________________________________________________________________________________________________ 

           _________386________________________________                                                                             
 3c48(B) : RIRMGEDAVEHARTFSWAATAAQLSSLYNDAIANENVDGETHHG                                                                             
         :                                                                                                                          
 3c4v(B) : RIRMGEDAVEHARTFSWAATAAQLSSLYNDAIANE*********                                                                             
           _________386________________________________                                                                             

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		95.0
Translation
(A) 		0.1
Closure
(%) 		37.4
Bending Residues
( green ) 		  195 - 197
  386 - 392
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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