Probable Atp-Dependent RNA Helicase Ddx48

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Probable Atp-Dependent RNA Helicase Ddx48
  Conformer 1
(PDB) 		2hxy (C)
  Conformer 2
(PDB) 		2hxy (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 204 0.09   40 - 243
2 168 0.38   244 - 411

Sequence


           ________________________________________________________________________________________________________________________ 
 2hxy(C) : PTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ 
         :                                                                                                                          
 2hxy(A) : PTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________________________________241____________________________________ 
 2hxy(C) : HVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 
         :                                                                                                                          
 2hxy(A) : HVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI 
           _________________________________________________________________________________241____________________________________ 

           ________________________________________________________________________________________________________________________ 
 2hxy(C) : TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYS 
         :                                                                                                                          
 2hxy(A) : TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYS 
           ________________________________________________________________________________________________________________________ 

           ________________                                                                                                         
 2hxy(C) : TQIDEMPMNVADLILE                                                                                                         
         :                                                                                                                          
 2hxy(A) : TQIDEMPMNVADLILE                                                                                                         
           ________________                                                                                                         

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		8.4
Translation
(A) 		-0.2
Closure
(%) 		78.0
Bending Residues
( green ) 		  241 - 244
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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