Probable Transcriptional Regulator

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Probable Transcriptional Regulator
  Conformer 1
(PDB) 		3fzv (A)
  Conformer 2
(PDB) 		3fzv (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 201 0.86   92 - 297
2 69 1.94   6 - 91

Sequence


           _____________________________________________________________________81_________________________________________________ 
 3fzv(A) : **YTLRQLKYFVTTVECGSVAEASRKLYIAQ-sISTAVKGLEESF-vQLF-lTPAGARFYRKAQELLRaHEFEQNlADNDVIAGQIDIGCFETVAPLYLPGLIAGFRQAYPGVEIRIRDG 
         :                                                                                                                          
 3fzv(C) : ASYTLRQLKYFVTTVECGSVAEASRKLYIAQPSISTAVKGLEESFGVQLFsLTPAGARFYRKAQELLRaHEFEQ----nDVIAGQIDIGCFETVAPLYLPGLIAGFRQAYPGVEIRIRDG 
           _____________________________________________________________________81_________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3fzv(A) : EQQELVQGLTSGRFDLAFLYEHDLDSTIETEPLpPQRPHALLPEGHRFAGQAQVSLRDLCLEPiLLDVQPSRTYFVSLFEELGLTPNIAFSSPSIEvRGvGQGFGFSLLVTRPHSECTYD 
         :                                                                                                                          
 3fzv(C) : EQQELVQGLTSGRFDLAFLYEHDLDSTIETEPLpPQRPHALLPEGHRFAGQAQVSLRDLCLEPiLLDVQPSRTYFVSLFEELGLTPNIAFSSPSIEvRGvGQGFGFSLLVTRPHSECTYD 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________                                                                             
 3fzv(A) : GKKVVvDLAEPVSTSGLAAAWLKRAQLTKPARLFVDYCREQLGK                                                                             
         :                                                                                                                          
 3fzv(C) : GKKVVvDLAEPVSTSGLAAAWLKRAQLTKPARLFVDYCREQLG*                                                                             
           ____________________________________________                                                                             

Morph
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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		139.2
Translation
(A) 		17.3
Closure
(%) 		86.1
Bending Residues
( green ) 		  81 - 94
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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