DynDom - Protein Domain Motions

RNA Helicase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	RNA Helicase
Conformer 1 (PDB)	1cu1 (A)
Conformer 2 (PDB)	1hei (A)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	296	1.13	190 - 333 435 - 445 484 - 624
2	139	1.24	334 - 434 446 - 483

Sequence

`________________________________________________________________________________________________________________________` `1cu1(A) : GSVVIVGRIILSGSGSITAYSQQTRGLLGCIITSLTGRDKNQVEGEVQVVSTATQSFLATCVNGVCWTVYHGAGSKTLAGPKGPITQMYTNVDQDLVGWQAPPGARSLTPCTCGSSDLYL` `:` `1hei(A) : **********************************************************************************************************************` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `1cu1(A) : VTRHADVIPVRRRGDSRGSLLSPRPVSYLKGSSGGPLLCPSGHAVGIFRAAVCTRGVAKAVDFVPVESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVL` `:` `1hei(A) : ****************************************************************************NSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVL` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________333_____________` `1cu1(A) : VLNPSVAATLGFGAYMSKAHGIDPNIRTGVRTITTGAPVTYSTYGKFLADGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSVTVPHPNIEEVALSNTGE` `:` `1hei(A) : VLNPSVAATLGFGAYMSKAHGVDPNIRTGVRTITTGSPITYSTYGKFLADGGCSGGAYDIIICDECHSTDATSILGIGTVLDQAETAGARLVVLATATPPGSVTVSHPNIEEVALSTTGE` `________________________________________________________________________________________________________333_____________` `_____________________________________________________________________________________434________445_____________________` `1cu1(A) : IPFYGKAIPIEAIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSVIPTIGDVVVVATDALMTGYTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTG` `:` `1hei(A) : IPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTNGDVVVVSTDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRTG` `_____________________________________________________________________________________434________445_____________________` `____________481_________________________________________________________________________________________________________` `1cu1(A) : RGRRGIYRFVTPGERPSGMFDSSVLCECYDAGCAWYELTPAETSVRLRAYLNTPGLPVCQDHLEFWESVFTGLTHIDAHFLSQTKQAGDNFPYLVAYQATVCARAQAPPPSWDQMWKCLI` `:` `1hei(A) : RGKPGIYRFVAPGERPSGMFDSSVLCECYDAGCAWYELMPAETTVRLRAYMNTPGLPVCQDHLEFWEGVFTGLTHIDAHFLSQTKQSGENFPYLVAYQATVCARAQAPPPSWDQMWKCLI` `____________481_________________________________________________________________________________________________________` `_____________________________________________` `1cu1(A) : RLKPTLHGPTPLLYRLGAVQNEVTLTHPITKYIMACMSADLEVVT` `:` `1hei(A) : RLKPTLHGPTPLLYRLGAVQNEVTLTHPITKYIMTCMSADLEV` `_____________________________________________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	16.0
Translation (A)	1.0
Closure (%)	82.2
Bending Residues ( green )	333 - 334 434 - 435 445 - 446 481 - 484
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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