Protein (Cell Division Protein Kinase 2)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Protein (Cell Division Protein Kinase 2)
  Conformer 1
(PDB) 		1b38 (A)
  Conformer 2
(PDB) 		1aq1  
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 243 0.61   4 - 46   56 - 61   79 - 293
2 26 0.49   47 - 55   62 - 78

Sequence


           ____________________________________46_______55____61_______________78__________________________________________________ 
 1b38(A) : MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIvPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDL 
         :                                                                                                                          
 1aq1    : MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIvPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDL 
           ____________________________________46_______55____61_______________78__________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1b38(A) : KPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDF 
         :                                                                                                                          
 1aq1    : KPQNLLINTEGAIKLADFGL-------------eVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDF 
           ________________________________________________________________________________________________________________________ 

           __________________________________________________                                                                       
 1b38(A) : SKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDVTKPVPHLRL                                                                       
         :                                                                                                                          
 1aq1    : SKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDVTKPVPHLRL                                                                       
           __________________________________________________                                                                       

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		5.8
Translation
(A) 		0.1
Closure
(%) 		85.4
Bending Residues
( green ) 		  46 - 47
  55 - 56
  61 - 62
  78 - 79
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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